Integrating with your CI
We integrate with your CI system via the Github Status API and the newer Checks API.
If you see the green checkmarks on your normal pull requests, there is nothing else for you to do. Pretty much all CI systems, either SaaS or your own hosted Jenkins do support the Status API by default, so there shouldn't be anything you need to do to make this work.
Whitelisting Depfu branches
If you're only building specific branches, it might be necessary to whitelist all Depfu branches, so they get build on your CI system. All our branches start with "depfu/", so for example this would work for Travis-CI:
branches: only: - master - /^depfu\//